Software

2020

  • COVIDep:  Real-time reporting of vaccine target recommendations for the COVID-19 coronavirus [Website] [Github]
  • Preliminary potential vaccine targets for the COVID-19 coronavirus (SARS-CoV-2) based on SARS-CoV immunological studies [Paper] [Github]

2019

  • MPF-BML-GUI: A standalone GUI-based package for maximum entropy model inference [Paper] [Github]
  • RocaSec: A standalone GUI-based package for robust co-evolutionary analysis of proteins [Paper] [Github]
  • Maximum-entropy-based simulator of Hepatitis C virus E2 evolution [Paper] [Github]

2018

  • RoCA: Software for identifying co-evolutionary sectors in proteins using Robust Co-evolutionary Analysis [Paper] [Github]